NIA Mouse Gene Index, mm9

5642. U026978
Annotation: high mobility group box 1     Gene?: Yes     Source: NM_010439    Symbol:  Hmgb1
Chromosome: chr5   Strand: -    Start: 149858277    End: 149864622
List: Negative strand of chr5 (N=5778)

Genome Browsers: UCSC -
View Regulatory Regions

            Similar Genes

Gene
Chr
Strand
Start
N exons
ORF
Symbol
Annotation
U050948
chrX
+
74701819
1
213
  
U158156
chr7
+
49275804
2
203
Gm6115predicted gene 6115
U202827
chr3
-
13669511
1
210
  
U354338
chr8
+
14136309
1
202
  
U023180
chr3
-
98383705
1
186
 AV130781 RIKEN full-length enriched mouse cDNA library, C57BL/6J whole body 11 days embryo Mus musculus cDNA clone 2700079E14, mRNA sequence
U052803
chr8
-
129505172
1
179
 BB838252 RIKEN full-length enriched, 2 days neonate thymus thymic cells Mus musculus cDNA clone C920002M15 5', mRNA sequence
U393465
chr11
-
46057167
1
176
  
U117303
chr7
-
109669009
1
174
  
U127684
chr15
+
63463152
1
147
  
U162381
chr18
-
75341872
1
147
  
U030417
chr15
-
73923583
2
133
 Copy of predicted gene 2710
U068938
chr13
-
101808040
2
133
 Copy of predicted gene 6115
U062226
chr7
-
103350535
2
133
 Copy of predicted gene 2710
U051436
chr19
+
29234607
2
133
 Copy of predicted gene 6115
U108900
chr11
+
40955159
1
133
 Copy of AV312391 RIKEN full-length enriched, adult male thymus Mus musculus cDNA clone 5830402D13 3' similar to L38477 Mus musculus (clone Clebp-1) high mobility group 1 protein (HMG-1) mRNA, mRNA sequence
U069049
chr6
-
142919273
1
130
  
U087861
chr4
-
144116313
1
128
  
U129290
chr12
+
86697439
1
128
 Copy of AGENCOURT_10055871 NIH_MGC_134 Mus musculus cDNA clone IMAGE:6509562 5', mRNA sequence
U103637
chr3
+
95334227
1
128
  
U054538
chr16
-
31991338
1
128
  
U362803
chr1
+
121684109
1
117
  
U132584
chr11
-
73891020
1
115
  
U154412
chr18
+
44221220
1
109
  
U376630
chr12
+
52509682
1
108
  
U064649
chr12
-
113168780
1
107
 Copy of vy47f05.r1 Stratagene mouse lung 937302 Mus musculus cDNA clone IMAGE:1298625 5' similar to gb:X12597 HIGH MOBILITY GROUP PROTEIN HMG1 (HUMAN); gb:U00431 Mus musculus HMG-1 mRNA, complete cds (MOUSE);, mRNA sequence
U045998
chr11
-
121747855
1
106
  
U053394
chr1
-
174598674
2
84
 Copy of predicted gene 2710
U318469
chr7
+
13382683
2
92
 Copy of ih75d03.y1 Melton Mouse E16 5 Pancreas Library 2 M16B2 Mus musculus cDNA clone IMAGE:5682101 5', mRNA sequence
U155226
chr19
-
6592098
2
80
 Copy of BY463069 RIKEN full-length enriched, pooled tissues, adult spleen, etc. Mus musculus cDNA clone K630139C02 3', mRNA sequence
U057240
chr3
-
21979580
2
70
  
U044450
chr1
-
19142891
2
70
 Copy of uz59d07.x1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:3673357 3', mRNA sequence
U047834
chr1
+
52641282
2
70
 Copy of BY278932 RIKEN full-length enriched, visual cortex Mus musculus cDNA clone K430335J03 5', mRNA sequence
U046558
chrX
+
142610385
3
48
 Copy of BY094145 RIKEN full-length enriched mouse cDNA library, C57BL/6J heart 10 days neonate Mus musculus cDNA clone K630099D07 5', mRNA sequence
U134612
chr6
+
16188266
2
0
  
U091331
chr18
-
75340262
2
0
  (possibly wrong strand)


Exon structure

Domains
IPR013719 - Domain of unknown function DUF1747, eukaryote
IPR015115 - Centromere protein B dimerisation
IPR005012 - Daxx protein
IPR007015 - DNA polymerase V
IPR015267 - Protein phosphatase 4 core regulatory subunit R2
IPR013863 - Vacuolar import and degradation, Vid27-related
IPR000910 - HMG1/2 (high mobility group) box

GO-Ontologies
GO:0008134 - transcription factor binding
GO:0045931 - positive regulation of mitotic cell cycle
GO:0045639 - positive regulation of myeloid cell differentiation
GO:0003677 - DNA binding
GO:0000401 - open form four-way junction DNA binding
GO:0032392 - DNA geometric change
GO:0000902 - cell morphogenesis
GO:0003690 - double-stranded DNA binding
GO:0030335 - positive regulation of cell migration
GO:0005730 - nucleolus
GO:0017055 - negative regulation of RNA polymerase II transcriptional preinitiation complex assembly
GO:0005576 - extracellular region
GO:0000793 - condensed chromosome
GO:0010858 - calcium-dependent protein kinase regulator activity
GO:0005615 - extracellular space
GO:0051450 - myoblast proliferation
GO:0031532 - actin cytoskeleton reorganization
GO:0008156 - negative regulation of DNA replication
GO:0005625 - soluble fraction
GO:2000426 - negative regulation of apoptotic cell clearance
GO:0051384 - response to glucocorticoid stimulus
GO:0003700 - sequence-specific DNA binding transcription factor activity
GO:0005488 - binding
GO:0008097 - 5S rRNA binding
GO:0005694 - chromosome
GO:0043388 - positive regulation of DNA binding
GO:0045819 - positive regulation of glycogen catabolic process
GO:0006357 - regulation of transcription from RNA polymerase II promoter
GO:0030324 - lung development
GO:0050727 - regulation of inflammatory response
GO:0008284 - positive regulation of cell proliferation
GO:0050930 - induction of positive chemotaxis
GO:0001934 - positive regulation of protein phosphorylation
GO:0003697 - single-stranded DNA binding
GO:0050786 - RAGE receptor binding
GO:0007399 - nervous system development
GO:0001654 - eye development
GO:0005125 - cytokine activity
GO:0003681 - bent DNA binding
GO:0005737 - cytoplasm
GO:0000400 - four-way junction DNA binding
GO:0045663 - positive regulation of myoblast differentiation
GO:0000402 - crossed form four-way junction DNA binding
GO:0010942 - positive regulation of cell death
GO:0030295 - protein kinase activator activity
GO:0043085 - positive regulation of catalytic activity
GO:0050790 - regulation of catalytic activity
GO:0010976 - positive regulation of neuron projection development
GO:0034341 - response to interferon-gamma
GO:0014911 - positive regulation of smooth muscle cell migration
GO:0043280 - positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006935 - chemotaxis
GO:0006954 - inflammatory response
GO:0009986 - cell surface
GO:0043005 - neuron projection
GO:0006288 - base-excision repair, DNA ligation
GO:0008201 - heparin binding
GO:0033151 - V(D)J recombination
GO:0051861 - glycolipid binding
GO:0031175 - neuron projection development
GO:0001786 - phosphatidylserine binding
GO:0033034 - positive regulation of myeloid cell apoptosis
GO:0042277 - peptide binding
GO:0070491 - repressing transcription factor binding
GO:0046983 - protein dimerization activity
GO:0000122 - negative regulation of transcription from RNA polymerase II promoter
GO:0008301 - DNA bending activity
GO:0005634 - nucleus
GO:0050831 - male-specific defense response to bacterium
GO:0045944 - positive regulation of transcription from RNA polymerase II promoter
GO:0043065 - positive regulation of apoptotic process
GO:0002053 - positive regulation of mesenchymal cell proliferation