CisView: Browser of regulatory regions

Advanced Search of Protein-Coding Genes          

    Select gene features

Search term:
Chromosome: Best match
Location: to bp
ORF length: to aa
Transcript length: to bp
Number of exons: to
Repeat length,%: to

Select transcription factor binding sites in promoters

No.Transcription factorFromToN hitsConser-
vation
Mismatch
1. N≥
2. N≥
3. N≥

Combine:    Distance from    to      List of

mask repeats       mask CDS

Select promoter features

Promoter quality
Cpg island at TSS
TATA box of quality:
Initiator (YYANWYYY)
Use only main promoter in each gene
Include predicted promoters